Home
Search
Download
Help
Contact





Duplicate gene pair information
Duplicate gene pair:AT1G17145-AT1G78420
Species:Arabidopsis
Duplication type:WGD
Function (paralog1):RING/U-box superfamily protein
Function (paralog2):RING/U-box superfamily protein

Regulation information
Data set:seedling-stress_Juntawong_2013
Log2 RF fold difference:0.8000771660451
Log2 mRNA fold difference:-0.22901093526767
Log2 TE fold difference:0.94080362309228
Sequences
Protein sequence

MGNKLGRKRQIVDERYTKPQQGLYMSKDVDIKKLKKLILESKLAPCYPGLEETPSSHHDL
EECPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTSNYAVEYRGGKTK
EEKSFEQIEEQRVIEAKIRMRQKEVEDDEERMQKRLESYSSSSSTSAATLDTEYGSAAED
DEEIVSSQESCLPSHHPQVTRDGQFDFDLEDIMVMEAIWLSMQEPGIQRNTSPDDISEKD
RNEEPSTPSSSSPSGGLACAIAVLAERQQMVGVSSSNQNVNLASQNLVPDNGNNSHYNAI
EQDSNHYLQGAGISYTRSDMTDDSGGETSREVTWQ

MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP
ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG
IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTSAISYNSLM
DDGEIAPSQNASVVRQHSRPRGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSASGEIT
SSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAERQMVGESSSHNHNHNV
NVSSYSMLPGNCDSYYDIEQEVDGIDNHHHHRHHYEMGETGSSNSYVSSYMTGEGFHNFP
PPPPLVIVPESFEEQMMMAMAVSMAEVHATTTCAPTEVTWQ

Other information
Ka divergence:-0.13416KaKs divergence:-0.245317
GC content 1 (%):41GC content 2 (%):44GC content divergence:0.035
Length 1 (bp):1008Length 2 (bp):1206Length divergence:0.089
MFE 1 (kcal):-276.1MFE 2 (kcal):-375.79MFE divergence0.153